Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATKSNIIMKVAKRHPLLDRIVIAAIVNRFFEILSSTLEHHNRVEIRGFGSFSIR------SYNLKETSHLMLQKFAKNQYFKTYFRSSKKLSDLINE
1IHF Chain:B ((2-91))
--TKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTGRNPKTGDKVELE----GKYV-PHFKPGKELRDRANI
General information:
TITO was launched using:
RESULT:
Template:
1IHF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26564 for 414 contacts (-64.2/contact) +
2D Compatibility (PS) -9055 + (NN) -1424 + (LL) 820
1D Compatibility (HY) -3600 + (ID) 1450
Total energy: -41273.0 ( -99.69 by residue)
QMean score : 0.487
(partial model without unconserved sides chains):
PDB file :
Tito_1IHF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IHF-query.scw
PDB file :
Tito_Scwrl_1IHF.pdb
: