Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQKGKELSSDVYEANIVLNDKTMATLPKIGYHMLNDQLVMHNHVTEEKVVISRDFHFLKAVKFSDDYKLTFYNALGNEFFEYKKYD--LQYSNISDKNKFIGLNCAKKIQFESRRVI
1D8V Chain:A ((15-52))
------------------------------------------------------------TKFIEDFRATLP-------FSHKVYDIPLLYSTISDSRRFILLNLTSYAYETISVAI
General information:
TITO was launched using:
RESULT:
Template:
1D8V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -3563 for 135 contacts (-26.4/contact) +
2D Compatibility (PS) -3753 + (NN) -60 + (LL) 5036
1D Compatibility (HY) -3200 + (ID) 900
Total energy: -6440.0 ( -47.70 by residue)
QMean score : 0.168
(partial model without unconserved sides chains):
PDB file :
Tito_1D8V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1D8V-query.scw
PDB file :
Tito_Scwrl_1D8V.pdb
: