Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSIKVQRKKMELGAEVADQFLSEMNQTKIKI----QDAKEATETARNVSKSFAQNAKDKNTELHDKVVNFTKKAETASENAEDFAREAFLSKQSTKTLKQETKEL |
1SPG Chain:A ((19-60)) | ---KIEGKSAELGAEALGRMLVSFPQTKIYFSEWGQDLGPQTPQVRNHGAVIMAAVGKAVKSIDNLVGGLSQLSELHAFKLRVDPANFKILAHNIILVISMYFPG |
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General information:
TITO was launched using:
| RESULT:
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Template: 1SPG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 17724 for 198 contacts (89.5/contact) +
2D Compatibility (PS) -3900 + (NN) -99 + (LL) 384
1D Compatibility (HY) 1200 + (ID) 50
Total energy: 15259.0 ( 77.07 by residue)
QMean score : 0.198
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