Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIRGIGTDIVYIPRILRILQKYGKKFLNKIYTEQEIEISRKYNSQEMQAKYLAKRFAAKEAFVKALG-GFSHGIIMKDIEIYNDVRGKPHLTVSKNFI-----FKDHMIHLSLSDDGDCATAFVIICSSLP
3QMN Chain:A ((5-126))
-IVGLGTDIAEIERVEKALARSGENFARRILTDSELE---QFHASKQQGRFLAKRFAAKEAASKALGTGIAQGVTFHDFTISHDKLGKPLLILSGQAAELASQLQVENIHLSISDERHYAMATVILER---
General information:
TITO was launched using:
RESULT:
Template:
3QMN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -81479 for 870 contacts (-93.7/contact) +
2D Compatibility (PS) -12726 + (NN) -3563 + (LL) 484
1D Compatibility (HY) -5600 + (ID) 2500
Total energy: -105384.0 ( -121.13 by residue)
QMean score : 0.586
(partial model without unconserved sides chains):
PDB file :
Tito_3QMN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3QMN-query.scw
PDB file :
Tito_Scwrl_3QMN.pdb
: