Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVQFLKENRAKRSLEIDSTVITLAIITLSLALVVYSVIKGVQKVAAKKTDNILSEVESQKVVSPRQKV
1TF2 Chain:A ((342-377))
---------AKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPTNRP
General information:
TITO was launched using:
RESULT:
Template:
1TF2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9097 for 104 contacts (-87.5/contact) +
2D Compatibility (PS) -3999 + (NN) 467 + (LL) 1016
1D Compatibility (HY) -2000 + (ID) 650
Total energy: -14263.0 ( -137.14 by residue)
QMean score : 0.172
(partial model without unconserved sides chains):
PDB file :
Tito_1TF2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TF2-query.scw
PDB file :
Tito_Scwrl_1TF2.pdb
: