Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTDKKDNAKANSGKIMYPNFFEIDFIINEKEIDCNVTRMLIEKAKKGHKFGETWEDYYRSISDNKRISIYKNV
2H2M Chain:A ((91-106))
----------------------------------------------AAVISKFWKSHKTKIRES---------
General information:
TITO was launched using:
RESULT:
Template:
2H2M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 1300 for 53 contacts (24.5/contact) +
2D Compatibility (PS) -1676 + (NN) -69 + (LL) 3824
1D Compatibility (HY) -400 + (ID) 100
Total energy: 2879.0 ( 54.32 by residue)
QMean score : 0.022
(partial model without unconserved sides chains):
PDB file :
Tito_2H2M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2H2M-query.scw
PDB file :
Tito_Scwrl_2H2M.pdb
: