Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDFIDEVKLYLKAGDGGDGCVSFRREKFVEFGGPNGGNGGKGGNIVFVSDANLNTLLNFRYRRHVKAGSGKSGASRDRSGTAGKNIVLKVPVGTQIIDEESEKIILDFNKPDMEFLIAQGGKGGLGNTNFKSSINRAPRHFTCGQFGEEKYVVLKLKVLSDVGIIGMPNAGKSKFLTRCSNADTKVGDYPFTTIKPHLGVAKVDN-SEVVIVDIPGIITDAHLGIGLGHKFLKHVERCKILLHLIDVT---HDNVVSAYNCMRNELELYNSDLVKKEEIIVLNKCDLLRKVEIFEKKNHLANYLNKEVLCLSIGEDLQPILRLLNEKLKKGSSKKVDVYDPFKR |
| 1LNZ Chain:A ((2-294)) | --FVDQVKVYVKGGDGGNGMVAFRREKYVPKGGPAGGDGGKGGDVVFEVDEGLRTLMDFRYKKHFKAIRGEHGMSKNQHGRNADDMVIKVPPGTVVTDDDTKQVIADLTEHGQRAVIARGGRGGRGNSRFATPANPAPQLSENGEPGKERYIVLELKVLADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLENTPEFPLYDEEEL- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1LNZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -92021 for 2297 contacts (-40.1/contact) +
2D Compatibility (PS) -30373 + (NN) -4637 + (LL) 196
1D Compatibility (HY) -22400 + (ID) 6500
Total energy: -155735.0 ( -67.80 by residue)
QMean score : 0.369
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