Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MELNKIAASILLSGLIIMIVSNVVDMLYNPEKYKIEHQTMVATGSNEPQKKIEQVALDIGALMQSASLEKGKSIAK-KCIACHSFDKGGANKVGPNLWNIVGNKKAHLGDSFNYSKAMLEKGGKWGYEELFAFLKSPKDYIKGTRMAFAGISNPQEIADLVSYLRQLSDNQVALPK
4DY9 Chain:A ((7-112))
------------------------------------------------------------APLPPGDVERGEKLFKGRAAQCHTATKGGSNGVGPNLFGIV-NRPSGKVEGFTYSKANAESGVIWTPEVLDVYLENPKKFMPGTKMSFAGIKKPQERADVIAYLETLK--------
General information:
TITO was launched using:
RESULT:
Template:
4DY9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42648 for 762 contacts (-56.0/contact) +
2D Compatibility (PS) -11115 + (NN) -3607 + (LL) 5344
1D Compatibility (HY) -6000 + (ID) 2300
Total energy: -60326.0 ( -79.17 by residue)
QMean score : 0.541
(partial model without unconserved sides chains):
PDB file :
Tito_4DY9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DY9-query.scw
PDB file :
Tito_Scwrl_4DY9.pdb
: