Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSISSPRINVMLDSVRSASKQLMRDFNELQISNVKSADFINKTYSRSKQTIYNCLHDYKQDYGFIFEDDIDQEAKEKDYTWFIMPIEGRENFSSRMVYFAVSVCLVHKNKVVAAVVNTPALRETFWAEEKKGAFLED---------------FRSRHIKMRMKSHEGSLIDVSGNLLNKLLPGNSNIRSVGSTVLGFTYLAAGRYSGIVYSGVNKYKALLGRLLLQESAGRLTEDNGFIIAGDVKLT
3LUZ Chain:A ((8-238))
----SAVMNVMVQAAMKAGRSLVRDYGE---------DYVSQADRKAEKIIFNELSKARPKFGFLMEESEEIIGEDSQHRFIVDPLDGTTNFLHGIPFFAVSIALESQGKIVAGVIYNPINDELFTAERGSGAFFNDRRCRVSARRRLEDCVIATGMP--------TYLIE-----LRNVMAEVSGIRRFGTAALDLAYVAAGRTDGFWEDNLQIWDMAAGILMVREAGGFVTDKEGGNDIFRKKNI
General information:
TITO was launched using:
RESULT:
Template:
3LUZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -143325 for 1657 contacts (-86.5/contact) +
2D Compatibility (PS) -20941 + (NN) -5840 + (LL) 1972
1D Compatibility (HY) -14400 + (ID) 2900
Total energy: -185434.0 ( -111.91 by residue)
QMean score : 0.460
(partial model without unconserved sides chains):
PDB file :
Tito_3LUZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LUZ-query.scw
PDB file :
Tito_Scwrl_3LUZ.pdb
: