Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNSVIEITSIKRRFCAYLIDMAVLLIPNLLIIILLKNFPLILDLLYMCVNCSYFTYFISSAAQATPGQQLMNIHTISLDGSKINLSLAFDRSISQFFLHLLNNVIAILIELFQEQNELVSALIILGVIMLLLTICWYLVACFSQEKQTYHDMLFDTIVVKGAIK
3RKO Chain:K ((8-79))
-----------------LILAAILFVLGLTGLVIRRNLLFMLIGLEIMINASALAFVVAGSYWGQTDGQVMYILAISLAAAEASIGLALLLQLHRRRQNLNIDSVSEMRG------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3RKO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49288 for 434 contacts (-113.6/contact) +
2D Compatibility (PS) -7193 + (NN) -708 + (LL) 8028
1D Compatibility (HY) -8400 + (ID) 900
Total energy: -58461.0 ( -134.70 by residue)
QMean score : 0.065
(partial model without unconserved sides chains):
PDB file :
Tito_3RKO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RKO-query.scw
PDB file :
Tito_Scwrl_3RKO.pdb
: