Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFITFEGIDGSGKTIQSELLANYFKQIHGENNMVLTREPGGTDFAEKVRGILLK-DSIDPVSELLLLISMRYEHVKKVILPALKKGKIVICDRFIDSTIAYQGYGLGVDLELIRDLHKLVKIKYPDTTFILDIDVQIGLSRAMDKNKYEEMNISFYNKVRKGFQEIAINEPDRCSIITE----IEAKDNNQVHVEIVNKVTATKPVLLRK
3LD9 Chain:A ((22-217))
MFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLLNESVRNLLFKAQGLDSLSELLFFIAMRREHFVKIIKPSLMQKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVIDVYPDITFIIDVD-----------------DMEFYYRVRDGFYDIAKKNPHRCHVITDKSETYDIDDINFVHLEVIKVLQ---------
General information:
TITO was launched using:
RESULT:
Template:
3LD9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -77068 for 1350 contacts (-57.1/contact) +
2D Compatibility (PS) -19485 + (NN) -14689 + (LL) 1964
1D Compatibility (HY) -23600 + (ID) 5200
Total energy: -138078.0 ( -102.28 by residue)
QMean score : 0.548
(partial model without unconserved sides chains):
PDB file :
Tito_3LD9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LD9-query.scw
PDB file :
Tito_Scwrl_3LD9.pdb
: