Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MWSRLVAMCCFCLLLTGVSSCSKRGVNAINKMNFVVKQMKEKRVFFDYDKSDISEAGADTLLDVMEVLQDDPNVKVTLIGHTDNRGSYEYNVALGARRADAAKNFMVS--CTPYLENRIKTASKGETEPLVYVADDSKNSKYEKEHAKNRRVEFSFSGMKK
4G4V Chain:A ((6-113))
--------------------------------------LAKRVVHFDYDSSDLSTEDYQTLQAHAQFLMANANSKVALTGHTDERGTREYNMALGERRAKAVQNYLITSGVNP---QQLEAVSYGKEAPVNPGHDESA-------WKENRRVEINYE----
General information:
TITO was launched using:
RESULT:
Template:
4G4V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13695 for 781 contacts (-17.5/contact) +
2D Compatibility (PS) -11774 + (NN) -9328 + (LL) 4056
1D Compatibility (HY) -4800 + (ID) 2150
Total energy: -37691.0 ( -48.26 by residue)
QMean score : 0.475
(partial model without unconserved sides chains):
PDB file :
Tito_4G4V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4G4V-query.scw
PDB file :
Tito_Scwrl_4G4V.pdb
: