Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKSFCVKAPAKINLFLHVVEKKETGYHLIEGLFVFANLSNFLEIKV-GEKDFRYDNPIVEFVNSELKISNKYNTVMRAVNLLLRHA------PVRTKVTVKVVKNIPTSAGLGSGSSDAGAVIRTLGKLWKIDRPI--LNEIALSVGADVPASIDSKPVLVRGIGEELCYINKFSLPTNIVLAKPKKKFLSTPEVFSKYGGNFSKPIEWRDDTEKDLLKLLK-ETENDLQEIAISLVPEIRDVILALESQEGSILSRMSGSGVTCFGIFDSEENAKTAAVNIREKQPEWWVCDAQLIV |
| 2WW4 Chain:A ((7-264)) | -------SPAKLNLFLYITGQRADGYHTLQTLFQFLDYGDTISIELRDDGDIRLLTPVE-------GVEHEDNLIVRAARLLMKTAADSGRLPTGSGANISIDKRLPMGGGLGGGSSNAATVLVALNHLWQCGLSMDELAEMGLTLGADVPVFVRGHAAFAEGVGEILTPVDP---PEKWYLVAHPGVSIPTPVI-------FKDPELPRNTPKRSIETLLKCEFSNDCEVIARKRFREV-DAVLSWLLEYAP--SRLTGTGACVFAEFDTESEAR----QVLEQAPEWLNGFVAKGV |
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General information:
TITO was launched using:
| RESULT:
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Template: 2WW4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -84782 for 2027 contacts (-41.8/contact) +
2D Compatibility (PS) -27073 + (NN) -12728 + (LL) 2416
1D Compatibility (HY) -17200 + (ID) 4000
Total energy: -143367.0 ( -70.73 by residue)
QMean score : 0.402
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