Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSLSDARSISYMSDIISIASDHAGYELKSEIKSYLETLGCKVLDRGCTAEQKCVDYPDYAVKIAEDIINKKADYGILICGTGLGMSIVANRFKGIHAVLCNSVEITKLAREHGNANVLCLGARFTASGLAKDIVKQFLETEFSKESRHKRRLDKLSNIASFSKRKKVQTYNEDEVSKFAKMVGEWWDENGKFKPLHMMNPVRVSYIIEKIKEL--KKCDLKKLSLLDVGCGGGILSESIARVGINVLGIDVCEENIKVAQSHAKKVGLNIEYTHTSIEELSNNQ--KYDVVLLMEVVEHVDNLELFIKKAIELLKPEGLIFISTINRTFKSFFLAIIGAEYILNWLPKGTHNWNKFLKPSEIANHLREGNVTLQDMAGMEYNIIKSEWNLTKGVDVNYILCGVMNS |
4KDC Chain:A ((22-241)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------EIAKFEAVASRWWDLEGEFKPLHRINPLRLGYIAERAGGLFGKK-------VLDVGCGGGILAESMAREGATVTGLDMGFEPLQVAKLHALESGIQVDYVQETVEEHAAKHAGQYDVVTCMEMLEHVPDPQSVVRACAQLVKPGGDVFFSTLNRNGKSWLMAVVGAEYILRMVPK-------FIKPAELLGWVDQTSLKERHITGLHYNPITNTFKLGPGVDVNYMLHTQN-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4KDC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -176799 for 1738 contacts (-101.7/contact) +
2D Compatibility (PS) -21523 + (NN) 515 + (LL) 12280
1D Compatibility (HY) -21200 + (ID) 4650
Total energy: -211377.0 ( -121.62 by residue)
QMean score : 0.588
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