Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLFLPLYTSQVLDRVISSESVSTLTMLTIITLSAFACSAMLETCRYLAMAKIGDWIDKAVTPDLIVRSIRLTSVQSSASSGEAIRDLGVIKNFITGNSIFSLFDTPWSLIYLVVIFMIHTSTGFIATIGIIILVSMAVWNELATKRILQETNEETIRNINAIDVATRNAEVVEAMGMSEFIVSDWCKRNDQNRAMQIKAQNRSNVITGITKFLRSTLQISVIGTGALLAITAHKTAGSIIAASILMGRVLAPFDAAVHTWKFLNQARMSYERLQRLI-----LTSPKREQTMALPEPAGKLEFDRVFFTPYGSNKSTI-KGVSFVIEPGDVVGVIGPSASGKSTIAKLTVGVWKPISGVVRLDGADVYTWNREIFGNYVGYLPQDIELFNTSVKANIARMRPDPNTEEIIKAAKIAGIHELILSLPNGYDTTIGNFGVTLSGGQKQLLGLARAFYGNTKLLVLDEPNANLDSNGEACLINAINVARKQNTTTIIITHKLPLLSLADKVILMSDGVIYTMGPRDEILSKLVASSSNTTEDEHSSVSG |
2HYD Chain:A ((260-565)) | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQ--GRIDIDHVSFQ-YNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYSIQNL----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2HYD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -164880 for 2211 contacts (-74.6/contact) +
2D Compatibility (PS) -33063 + (NN) -18729 + (LL) 19752
1D Compatibility (HY) -25600 + (ID) 5400
Total energy: -227920.0 ( -103.08 by residue)
QMean score : 0.419
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