Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFDVTILTIFPEMFPGFLNYSLAGKALEKKIWNLQVINIRFFAKDRHLTVDHIPYGGGAGMIMRPDVVGDAVDSVLSTHKDTKFIYMTPSGTKFDQSIARELVGFPHITILCGRFEGIDQRVIDEYTPYELSIGDYILSGGEPAAMVILDVCVRLLPGVVNNSGSITEESFSYSGGVLEYPQYTRPKQWRKHRVPKILLSGNHKKISDWRQKQSQVITKRRRPELLDGEINDKFT
3KNU Chain:A ((4-211))
----NVLTIFPQMFPGPLGVSNLGSALKKGLWTLNVFDIRAFA-----TVDDTPYGGGPGMLLRADVLGRCIDEVLSLHPNTKLMFTSPRGVSFTQDIARQTMNFDNITLLCGRFEGIDERVVDFYKLQEVSIGDYVLSGGELAAMVIIDTCVRMVPGVI------------------EYPQYTRPASWKGMEVPEVLLTGNHGEIEKWRRNASL--------------------
General information:
TITO was launched using:
RESULT:
Template:
3KNU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -168408 for 1318 contacts (-127.8/contact) +
2D Compatibility (PS) -20062 + (NN) -5832 + (LL) 2284
1D Compatibility (HY) -23200 + (ID) 5450
Total energy: -220668.0 ( -167.43 by residue)
QMean score : 0.456
(partial model without unconserved sides chains):
PDB file :
Tito_3KNU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KNU-query.scw
PDB file :
Tito_Scwrl_3KNU.pdb
: