Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNKYYDSNNIFAQILRGELPCKKVYEDEDVLAFYDKYPDAPVHILVVPKSQYISYDDFIFKASAEEIVGFFKTVREITYKYNLEKTGYRLVTNCGENGEQVVPHFHMHILGGKRLGKHVNL
1XQU Chain:A ((34-146))
------LENCVFCKIIKRELPSTIYYEDERVIAIKDINPAAPVHVLIIPK-EHIANVKEINESNAQILIDIHKAANKVAEDLGIAEKGYRLITNCGVAAGQTVFHLHYHLLGGVDMGPKI--
General information:
TITO was launched using:
RESULT:
Template:
1XQU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -74577 for 798 contacts (-93.5/contact) +
2D Compatibility (PS) -12465 + (NN) -7675 + (LL) 416
1D Compatibility (HY) -9200 + (ID) 2100
Total energy: -105601.0 ( -132.33 by residue)
QMean score : 0.568
(partial model without unconserved sides chains):
PDB file :
Tito_1XQU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XQU-query.scw
PDB file :
Tito_Scwrl_1XQU.pdb
: