Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MANVSSDTELIKSTIMSIIDQNKGRDIVTFDVQNKTIIAKYMIIASGDSSRHVKALAEHVMKSLKQY--YKMDVEGMDEGNWVILNFQGIMVHIFRPEVREYYKIEELWN
3UPS Chain:A ((14-118))
-----FDPE-LLKLVTDSLDDDQALEIATIPLAGKSSIADY-VIASGRSSRQVTA-AQKLADRIKAATGYVSKIEGLPAADWVLLDAGDIIIHLFRPEVRSFYNLERMWG
General information:
TITO was launched using:
RESULT:
Template:
3UPS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 6412 for 718 contacts (8.9/contact) +
2D Compatibility (PS) -10287 + (NN) -1207 + (LL) 996
1D Compatibility (HY) 2800 + (ID) 350
Total energy: -1636.0 ( -2.28 by residue)
QMean score : 0.125
(partial model without unconserved sides chains):
PDB file :
Tito_3UPS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UPS-query.scw
PDB file :
Tito_Scwrl_3UPS.pdb
: