Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIITIFGPPGSGKGTQSSLLIERYNLKLISVGDLLRNIISSGSELGKKIKDTVESGNLIQDGVICELLYDQL--ALMDDNFLFDGFPRNLNQAHFLTQILRERYNRDVDIVIELQLNDKVAIDRLKNRLVCLDCKSVYSTSSFKDDNNLVCTRCKSARLEKRIDDSDLSAIDRRIGEYHVQVKSLREYYRDKLL--MIDANLNVDQVKQEI---ESKISCSLV
2C9Y Chain:A ((21-233))
----LLGPPGAGKGTQAPRLAENFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVVELIEKNLETPLCKNGFLLDGFPRTVRQAEMLDDLMEKRKEK-LDSVIEFSIPDSLLIRRITGRLIHPKSGRSYH-EEFNPPKEPMKDDITGEPLIRRSDDNE-KALKIRLQAYHTQTTPLIEYYRKRGIHSAIDASQTPDVVFASILAAFSKATC---
General information:
TITO was launched using:
RESULT:
Template:
2C9Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -86189 for 1422 contacts (-60.6/contact) +
2D Compatibility (PS) -21997 + (NN) -6576 + (LL) 1160
1D Compatibility (HY) -14800 + (ID) 3850
Total energy: -132252.0 ( -93.00 by residue)
QMean score : 0.542
(partial model without unconserved sides chains):
PDB file :
Tito_2C9Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2C9Y-query.scw
PDB file :
Tito_Scwrl_2C9Y.pdb
: