Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MGYVINIQAIKKQIELSPQSCGVYQMIGDKDKVLYVGKAKNLKSRLSNYLRYENLSERTKFMLSQVIKVEVLVTENEIDALLLEARLIKSLKPPYNIIFKDGRSYPYIVISKHNYPRIAQYRGKFKKGEFHYYGPFISVAAVKQTMLSLQKTFLLRVCSDQYFASTKRPCIEYQIKRCSAPCVGKITKDDYCQSVKQTRDTLLGRNEKVKKQLSSTMEKCSKEENYELAAIYRDRLKFLEQIQMQSMDFSFEKDADFFGIARKEDLACIGVLSFRNKDNYGSTPYFVENCSDHPDDEILSTFLIKLYNSANIPPAQIYVSDFVTGKEIIEQALHNVTHKPIKALHAKSKKEHNLLKFVYDNSQRSLEQKLTDYKNNLEKFEELSKIFLLPNIPKRVEVYDNSHTSGNQQVGVMVVAGKEGFLK-SEYRKFTIKGEILGDDYEMMREVLTRRFSNNTKDVVPDFLLIDGGPGHISVVQNVLNTLNINVPFACMAKGSYRNAGNERFYMPNREDFTLKNDSKVMLYLQSLRNEAHRFAITSHRKKRDKQFFVSPLSKITSIGDKRKNALMSHFGSVENISKASLAEIQNVARISKELAEVILKHVDNKE |
2NRT Chain:A ((7-216)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EALEELMKLLNMKDFPYRIEGIDISHLQGKYTVASLVVF-EDGFPKKGDYRRYKIEQD-HPDDYESIRTVVKRRYS---KHPLPNLLFVDGGIGQVNAAIEALKEIGKDCPVVGLAKKE------ETVVFENRE-IHLPHDHPVLRLLVQIRDETHRFAVSYHRKRREKESLRSVLDNVPGIGPIRKKKLIEHFGSLENIRSASLEEIARVIG-STEIARRVLDIL---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2NRT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -103608 for 1560 contacts (-66.4/contact) +
2D Compatibility (PS) -23022 + (NN) -10987 + (LL) 27376
1D Compatibility (HY) -17200 + (ID) 4200
Total energy: -131641.0 ( -84.39 by residue)
QMean score : 0.634
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