Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLDHSTSYGLITNIRPSPSWLSKLSFWRKKTLLISQFRTSVALYVNENNHILNAIKGSSLSKILDRVNIRDKDGLSALHLTVKGGNVNIVKLLLDGGAEPNIRSWMNLTTPLHNAVLNNRVYIVKLLFDSHANSNILSRSDISPLYFAVVNN
1N0R Chain:A ((28-111))
------------------------------------------------------------------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK-NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG
General information:
TITO was launched using:
RESULT:
Template:
1N0R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31621 for 679 contacts (-46.6/contact) +
2D Compatibility (PS) -9083 + (NN) -5107 + (LL) 4588
1D Compatibility (HY) -1200 + (ID) 1700
Total energy: -44123.0 ( -64.98 by residue)
QMean score : 0.488
(partial model without unconserved sides chains):
PDB file :
Tito_1N0R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N0R-query.scw
PDB file :
Tito_Scwrl_1N0R.pdb
: