Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKKLTENKKPLVDKEDKKTPPVKGFTKKNK----SRRDFITLTTCAMASIGTVSG----LWPLIKSMNPSAEVLAMSTVEVNLSGIQEGHGIKVKWQGKPVFIRRRTKQEIKAARVVNVEDLRDPQSDEQRVHKGKDEWLIMVGVCTHLGCVPVEHATKDGNGWFCPCHGSYYDTSGRVIGGPAPKNMVVPDYFFPNENVVVIGKKA
1BCC Chain:E ((12-196))
----------------DYRRPPDDYSTKSSRESDPSRKGFSYLVT-AVTTLGVAYAAKNVVTQFVSSMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVK--KPEWVILIGVCTHLGCVPIANA-GDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPSYEFTSDDMVIVG---
General information:
TITO was launched using:
RESULT:
Template:
1BCC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49414 for 1124 contacts (-44.0/contact) +
2D Compatibility (PS) -18977 + (NN) -10246 + (LL) 1228
1D Compatibility (HY) -16400 + (ID) 4300
Total energy: -98109.0 ( -87.29 by residue)
QMean score : 0.413
(partial model without unconserved sides chains):
PDB file :
Tito_1BCC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BCC-query.scw
PDB file :
Tito_Scwrl_1BCC.pdb
: