Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFIQIEETPNPNTLKFLPGFAILNERETADFSNPDEIKNSKLAADLFQIEHVIRVFFGHDFISVTKSDGISWDILKVEILTTVMDHFTSGGKALDRKGVNDNNIPDEEFFDENDIEIVNRIKELMENYIKPAVAQDGGDIKFRGYKDGIVYVELQGACSGCPSAAITLKQGVQNMLCYHIPEVSGIETTL
1VEH Chain:A ((14-84))
--------------------------------------------------------------------------------------------------------------------VVAMIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIPEVEGVEQVS
General information:
TITO was launched using:
RESULT:
Template:
1VEH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50715 for 452 contacts (-112.2/contact) +
2D Compatibility (PS) -7373 + (NN) -705 + (LL) 6848
1D Compatibility (HY) -8800 + (ID) 2000
Total energy: -62745.0 ( -138.82 by residue)
QMean score : 0.423
(partial model without unconserved sides chains):
PDB file :
Tito_1VEH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VEH-query.scw
PDB file :
Tito_Scwrl_1VEH.pdb
: