Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKISKFVFLFLFCLGFNLQASGTLNIEEVITRKGFKFLFVENCDLPKVSLNISFKDAGYAYENVEKQGLTWFTSLAIQEGAGKN----DAKDFAKKLEDKGISLNFIAGLEAFRAS--LNTLSENLEE--AVSLLSDAIMHPKVDLEGLNRAFEKAKVNFNNLEKDPYFIAGKELNTLLFKKHPYSKSEYGILDTIMSITRDDVLAYVKRNFTKDNIVISVVGCTTKEEVSALLDKYLSKLP-------LKRSKVRKIPVKNNFGPAESKNIFMDIPQSVIFFAQKGIAYEDPDYYSASVLINALGGMGLNSILMKELRQNLGITYGVFAHIIPNKHGNAIVGNMSTDSSTAGKAILAVKDTLSRIKREGIDEQLFKDAKTILVNNLTFFLSNNTNTAMLLDDMQINDRDVNRINNYADIINDVKLEKVNELASSLLDPENLFFVKVGRNT |
3AMJ Chain:B ((2-412)) | -----------------------IKIEHWTAPSGAQVYYVENRTLPMLDVQVDF-DAGSAREPADQVGVASMTASLMDAGTGSGKSALDENAIADRLADIGARLG--GGAEADRASFSLRVLSSPAERNSALTILRDILAHPTFPAPVLERERARAIAGLREAQTQPGSILGRRFTELAYGKHPYG--HVSSVATLQKISRDQLVSFHRTHYVARTAVVTLVGDITRAEAETIAQQLTADLPAGATLPPLPDPAMPRATVERIANPATQAHIAIGMPT---------LKRGDPDFFPLVVGNYALGGGGFESRLMKEIRDKRGLSYGAYSYFSPQKSMGLFQIGFETRAEKADEAVQVANDTLDAFLREGPTDAELQAAKDNLINGFALRLDSNAKILGQVAVIGYYGLPLDYLDHYTERVQAVTVEQVREAFARHVKRENLITVVVGGK- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3AMJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -161785 for 3272 contacts (-49.4/contact) +
2D Compatibility (PS) -42587 + (NN) -17229 + (LL) 3312
1D Compatibility (HY) -16000 + (ID) 5650
Total energy: -239939.0 ( -73.33 by residue)
QMean score : 0.492
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