Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMIFRLLFLLVFISVNSYAVIKQDLSNNHYIQKINEITSKELLLPLPDDKLLGDSKAPILMIEYASLTCYHCSLFHREVFPEIKKKYIDTGKMLYIFRHFPLDYRGLKAAMLSYCYEKQEDYFNFNKAVFNSIDSWNYSNLSDLTVLQKVAALSNLKQDTFNRCINDKEVMDKIINDKSLAINKLGIMATPIFFIKLNNDRSHTEPNKIRHEGYKAQEYFTNVIDRLYEKAIVK
3F4R Chain:A ((20-216))
-------------------------------------TSNELLLPLPNDKLLGDPKAPILMIEYASLTCYHCSLFHRNVFPKIKEKYIDTGKMLYIFRHFPLDYRGLKAAMLSHCYEKQEDYFNFNKAVFNSIDSWNYYNLSDLTLLQRIAALSNLKQDAFNQCINDKKIMDKIVNDKSLAINKLGITATPIFFIKLNDDKSYIEHNKVKHGGYKELKYFTNVIDKLYGKAIVK
General information:
TITO was launched using:
RESULT:
Template:
3F4R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -137027 for 1509 contacts (-90.8/contact) +
2D Compatibility (PS) -20838 + (NN) -8778 + (LL) 3956
1D Compatibility (HY) -29600 + (ID) 8350
Total energy: -200637.0 ( -132.96 by residue)
QMean score : 0.655
(partial model without unconserved sides chains):
PDB file :
Tito_3F4R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3F4R-query.scw
PDB file :
Tito_Scwrl_3F4R.pdb
: