Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQLEKIQSDVEDIWKNRSKLSNRSVKRAARVIIKKVIKLLDSGKIRVAERLSDGKWIVHTWIKQAISLYFLTEESKMID----HTGWWFDKVNNKFDGWNEEEFHQSKIRAVPGCFVRQSAYVGTNVVLMPSFINVGAYISSGTMIDTWSTIGSCAQIGKNCHVSGGVGIGGVLEPIQASPVIIEDNCFIGARSEVAEGVIIREGSVLGMGVFIGASTKIIDRETNKVFYGEVPPYSVVVPGSTLSANNI-------SIYCAIIVKKVDEKTRQKTSINEILRD
3EG4 Chain:A ((6-284))
--LASLEKTIEKAFDERDGI-NTATRGEVREAVEQSLILLDRGEVRVAEKQADGNWHVNQWLKKAVLLSFRLNPMEVIKGGPGQSSWW-DKVPSKFDGWTANEFEKAGFRAVPNCIVRHSAYIAPNAILMPSFVNLGAYVDKGAMIDTWATVGSCAQIGKNVHLSGGVGIGGVLEPMQAGPTIIEDNCFIGARSEVVEGCIVREGSVLGMGVFIGKSTKIVDRATGEVFYGEVPPYSVVVAG-TMPGKNVPGENWGPSLYCAVIVKRADEKTRSKTSINELLRD
General information:
TITO was launched using:
RESULT:
Template:
3EG4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -245894 for 2173 contacts (-113.2/contact) +
2D Compatibility (PS) -29567 + (NN) -13486 + (LL) 404
1D Compatibility (HY) -31200 + (ID) 8050
Total energy: -327793.0 ( -150.85 by residue)
QMean score : 0.639
(partial model without unconserved sides chains):
PDB file :
Tito_3EG4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3EG4-query.scw
PDB file :
Tito_Scwrl_3EG4.pdb
: