Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDLV-ALKFIAIGLSVLGILGAGLGVANIFSTMLSGLARNPESEGKMKIYVYVGAGMVEFTGLLAFVLAMLLMFVA
2WPD Chain:J ((1-74))
MQLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFGV
General information:
TITO was launched using:
RESULT:
Template:
2WPD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35459 for 403 contacts (-88.0/contact) +
2D Compatibility (PS) -7774 + (NN) -5289 + (LL) 0
1D Compatibility (HY) -9600 + (ID) 1400
Total energy: -59522.0 ( -147.70 by residue)
QMean score : 0.078
(partial model without unconserved sides chains):
PDB file :
Tito_2WPD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2WPD-query.scw
PDB file :
Tito_Scwrl_2WPD.pdb
: