Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MALNPLEQFKIHTIVELPKLFGHDINFTNSSLFMMISVVSVILFLLLGVRKGAVIPGYLQAAVEYVYDFITSIIESNTGSKGLKHIPLVFTVFTFTLSCNLVGMLPYSFT--VTSHVI--------------VTFALSMIVFTYTTIVGFKEKGINFLRILLPEGIPSWLAPMMVFIKLFAYLARPISLSIRLAANMIAGHTIIKVVAGFIMNMHLILTPIPFLFIIALIGFEVFVAILQAYIFTILTCIYLSDAVK
1C17 Chain:M ((103-265))
--------------------------------------------------------------------------------------PLALTIFVWVFLMNLMDLLPIDLLPYIAEHVLGLPALRVVPSADVNVTLSMALGVFILILFYSIKMK---------------------------SLLSKPVSLGLRLFGNMYAGELIFILIAGLLPWWSQWILNVPWAI------FHILIITLQAFIFMVLTIVYLS----
General information:
TITO was launched using:
RESULT:
Template:
1C17.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78119 for 703 contacts (-111.1/contact) +
2D Compatibility (PS) -11553 + (NN) 1507 + (LL) 10556
1D Compatibility (HY) -21600 + (ID) 2050
Total energy: -101259.0 ( -144.04 by residue)
QMean score : -0.160
(partial model without unconserved sides chains):
PDB file :
Tito_1C17.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1C17-query.scw
PDB file :
Tito_Scwrl_1C17.pdb
: