Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MIGSPVILAPMSGVTDYPFRSIVKKLGASLLVSEMIASRAMIM--QTRQSMQKAKVDELTAVQLAGCEPDIMAEAAKLNEDMGAKIIDINFGCPVKKVVNGYAGSALMRNEKKAAEIIEAVVKAVNVPVTVKIRTGWNNENRNAPRLAKIAEDLGAKMITVHGRTRAQLYNGQADWKFIRNVKEQVKIPVIVNGDIKSLNDIQNALKESRADGVMIGRGAYGRPWLINQAINFLSGSEVSEPTASEKLSIILEHYDNILEYYGNDAGIKIARKHIGWYSSGFKNSSEFRVRVNNMTDSMEVKENIVSFFSQV |
1VHN Chain:A ((7-308)) | -----VGLAPMAGYTDSAFRTLAFEWGADFAFSEMVSAKGFLMNSQKTEELLPQPHERNVAVQIFGSEPNELSEAARILSEK-YKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVSGKFSVKTRLGW--EKNEVEEIYRILVEEGVDEVFIHTRTVVQSFTGRAEWKAL-SVLEK-RIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIGRPWIFKQIKDFLRSGKYSEPSREEILRTFERHLELLIKTKGERKAVVEMRKFLAGYTKDLKGARRFREKVMKIEEVQILKEMFYNFIKEV |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VHN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -159405 for 2579 contacts (-61.8/contact) +
2D Compatibility (PS) -32448 + (NN) -11181 + (LL) 32
1D Compatibility (HY) -18400 + (ID) 5150
Total energy: -226552.0 ( -87.84 by residue)
QMean score : 0.592
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