Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MISKEDLLELMKIRHSRRSYGQSKLAHQEEINMLIETAWLSPSRYGDEPWRQVICNRQSNQDAWEKLLSCPTEPNQKWAKDTQILIISLSTKNF--HDHTKIVNFWGSHDTGIANYTFMLQSYIYEFNAHQMSRFDRNKIVKNSIYQMILI
2FRE Chain:A ((20-145))
-------------RWSPRAFDGSPMPKEHLLTILDAAHW-APSASNHQPWRFVYAHKDSED--WPLFVELLMEGNQKWAKNASVLLFVISRDHTISHEGEKKPSATHSFDAGAAWFSLAMQAHLLGYHAHGMGGIFKDRIVEKLDIPDGFK
General information:
TITO was launched using:
RESULT:
Template:
2FRE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2815 for 831 contacts (-3.4/contact) +
2D Compatibility (PS) -13256 + (NN) -5735 + (LL) 1828
1D Compatibility (HY) -7200 + (ID) 1750
Total energy: -28928.0 ( -34.81 by residue)
QMean score : 0.310
(partial model without unconserved sides chains):
PDB file :
Tito_2FRE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2FRE-query.scw
PDB file :
Tito_Scwrl_2FRE.pdb
: