Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVKIRLARFGAKKRPFYRIVVADSRAPRDGRFIERIGQYDPMLSKDNKNCVVVKADRLKYWLNVGAQASERVLWFIKKGIITLEAEKKKVETKKAEIKKVKEQEV
3J6V Chain:P ((17-118))
--LTIRLALGGCTNRPFYRIVAAHNKCPRDGRFVEQLGSYDPMPNSHGEKLVALNLDRIRHWIGCGAHLSKPVEKLL--GLSGFFPLHPMVITNAERLRRKRAQEV
General information:
TITO was launched using:
RESULT:
Template:
3J6V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22343 for 630 contacts (-35.5/contact) +
2D Compatibility (PS) -10084 + (NN) -681 + (LL) 480
1D Compatibility (HY) -7200 + (ID) 1950
Total energy: -41778.0 ( -66.31 by residue)
QMean score : 0.489
(partial model without unconserved sides chains):
PDB file :
Tito_3J6V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3J6V-query.scw
PDB file :
Tito_Scwrl_3J6V.pdb
: