Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTLIPIVIEQTSRGERAYDIYSRLVKERIIFVTGPVEDNMASVIVAQLLFLESENPDKDIYMYINSPGGVVTAGLSIYDTMQYIKPDVSTLCIGQAASMGSLLLAAGTEGKRYSLPHSRIMIHQPSGGYQGQATDIEIHANEILRVKRKLNQIYEKHTGNSLKKIEGMMERDKFMDPEEARRIGLIDRVIAERKDIKVENIKVEQKVG
3MT6 Chain:R ((A-205))
---VPMV---------SFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTH----------------
General information:
TITO was launched using:
RESULT:
Template:
3MT6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -118428 for 1377 contacts (-86.0/contact) +
2D Compatibility (PS) -19371 + (NN) -8697 + (LL) 2360
1D Compatibility (HY) -25200 + (ID) 6000
Total energy: -175336.0 ( -127.33 by residue)
QMean score : 0.529
(partial model without unconserved sides chains):
PDB file :
Tito_3MT6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MT6-query.scw
PDB file :
Tito_Scwrl_3MT6.pdb
: