Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDKDLILLGIASVIGALTGLWLSFTALSHLIIGGVIAAIPVMLLSAYYICDSIRKGKFSKKDLFESYLCMLHKCHDWSWSCCNRNCFFPGAMIGIGYATLAGGAIAPIIAIFPMYSIIVPIAEKVNEYIIFPIIEYFSLKGKEHEQV
3OTR Chain:A ((102-165))
--------------------------------------------------------------------------NEWGYS---KSKLGANAILGVSIACCRAGAASKGL---PLYKYIATLAGKTIDKMVMPVPFFNVINGGEHAGN
General information:
TITO was launched using:
RESULT:
Template:
3OTR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19175 for 274 contacts (-70.0/contact) +
2D Compatibility (PS) -6623 + (NN) 728 + (LL) 6804
1D Compatibility (HY) -4400 + (ID) 800
Total energy: -23466.0 ( -85.64 by residue)
QMean score : -0.019
(partial model without unconserved sides chains):
PDB file :
Tito_3OTR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OTR-query.scw
PDB file :
Tito_Scwrl_3OTR.pdb
: