Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFVNGGQLKKINQKWLIIGTGLLLFMMMLPSIILLAKMTIGLVMVLVVAIAIKIASKTISNVLEDKQADPNQLTSQTT------------QSRIINLAVGLVSIFTGGL----------------SLLIIAKTGIAVICAAVVTLAIYEYAKDYKYAEDKEIGKSINDKLDEIAKNTTNFIVSGIEKLVSPQEQQV
1L7V Chain:A ((63-165))
--------------------------------------------VLLVGAALAISGAVMQALFENPLAEPGLLGVSNGAGVGLIAAVLLGQGQLPNWALGLCAI-AGALIITLILLRFARRHLSTSRLLLAGVALGIICSALMTWAIYFSTSVDLRQLMYWMMGGFGGVDWRQSWLMLALIPVLLWICCQSRPMNM
General information:
TITO was launched using:
RESULT:
Template:
1L7V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10761 for 404 contacts (-26.6/contact) +
2D Compatibility (PS) -7414 + (NN) -2183 + (LL) 4548
1D Compatibility (HY) -10400 + (ID) 1350
Total energy: -27560.0 ( -68.22 by residue)
QMean score : -0.061
(partial model without unconserved sides chains):
PDB file :
Tito_1L7V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1L7V-query.scw
PDB file :
Tito_Scwrl_1L7V.pdb
: