Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGSPEFAINALNSLLKSKNEVVAVYTKAPKPSGRGQKLTKSPVHIIAEESGIEVCTPTSLKPLVEQEKFKKFKPDVAVVAAYGLILPKEILNILKYSCINIHPSLLPRWRGAAPIQHTILAGDRKTGISIMQLDGGLDSGPILKQKKFLVEKNDNYKTLHDKLSKLGSNLLMEVIDEIEKHP-PLEQSDDG-ACYADKIE------DYKIYASDICEVAYRKVKAFYPK--AFVKIEHKRVRILDADFEVDASLTSGQGKIIN-DNMHISLKSGTLIPKI--VQMEGRNSCNIKDFVRGLKFSMVKKFIE |
| 3TQQ Chain:A ((9-299)) | -GTPQFAVPTLRALIDSSHRVLAVYTQPD----------ESPVKEIARQNEIPIIQPFSLRDEVEQEKLIAMNADVMVVVAYGLILPKKALNAFRLGCVNVHASLLPRWRGAAPIQRAILAGDRETGISIMQMNEGLDTGDVLAKSACVISSEDTAADLHDRLSLIGADLLLESLAKLEKGDIKLEKQDEASATYASKIQKQEALIDWRKSAVEIA----RQVRAFNPTPIAFTYFEGQPMRIWRATV-VDEKTDFEPGVLVDADKKGISIAAGSGILRLHQLQLPGKRVCSAGDFINAHGDKLIPGKTV |
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General information:
TITO was launched using:
| RESULT:
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Template: 3TQQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -130446 for 2059 contacts (-63.4/contact) +
2D Compatibility (PS) -28982 + (NN) -10206 + (LL) 908
1D Compatibility (HY) -25600 + (ID) 6050
Total energy: -200376.0 ( -97.32 by residue)
QMean score : 0.545
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