Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSWARSSAILMLSTFAAGYQEEVLTLMEKEEEEFLSHEQVKALLEKIRGEVLKTPIW-HNVMDPVDDFVGRVMN
3P3Y Chain:A ((66-126))
VSMRRRSGTLVIDFRSGGRPEE----YEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLT
General information:
TITO was launched using:
RESULT:
Template:
3P3Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 379 for 226 contacts (1.7/contact) +
2D Compatibility (PS) -5769 + (NN) 2090 + (LL) 596
1D Compatibility (HY) -2400 + (ID) 1050
Total energy: -6154.0 ( -27.23 by residue)
QMean score : -0.045
(partial model without unconserved sides chains):
PDB file :
Tito_3P3Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3P3Y-query.scw
PDB file :
Tito_Scwrl_3P3Y.pdb
: