Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNKKALLELSNGLKIELPVLSGTMGYDVLNIKDLYKVTGLLTYDPGFVSTASCSSAITFIDGDEGVLRYRGHDIADLAQSNDFTAVIYLLLYGKLPNLEQHKKFFLKIQELSKVPEQVVNVIKAFPKTAHPMSILIACFATLSALYHERYGNNVSNENLDFG-ISAIAQVPAIIAMVYRHTNDQEFIDTDNELNYSKSFLRMMFGNALDNDK-STLFAKALDKIFTLHADHEQNASTAAVRVVGSAGSNLFACLSAGVATLWGPVHGGANESVINMLKEIEQSGNVDKFIEKAKDDKDPFKLMGFGHRVYKNYDPRARILKDACDEILNKLE-QDSKLLKIAKELEKIALKDEYFVVRKLYPNVDFYSGIIMNAINIPPSMFTPIFALARTTGWVTQWYEMINDKETKICRPRQLYVGK |
| 2H12 Chain:A ((18-424)) | ----------DGKSAEMPVLSGTLGPDVIDIRKLPAQLGVFTFDPGYGETAACNSKITFIDGDKGVLLHRGYPIAQLAENASYEEVIYLLLNGELPNKAQYDTFTNTLTNHTLLHEQIRNFFNGFRRDAHPMAILCGTVGALSAFYP---------ANRDLAAMRLIAKIPTIAAWAYKYTQGEAFIYPRNDLNYAENFLSMMFARMSEPYKVNPVLARAMNRILILHADHEQNASTSTVRLAGSTGANPFACIAAGIAALWGPAHGGANEAVLKMLARIGKKENIPAFIAQVKDKNSGVKLMGFGHRVYKNFDPRAKIMQQTCHEVLTELGIKDDPLLDLAVELEKIALSDDYFVQRKLYPNVDFYSGIILKAMGIPTSMFTVLFAVARTTGWVSQWKEMIEEPGQRISRPRQLYIGA |
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General information:
TITO was launched using:
| RESULT:
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Template: 2H12.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -280268 for 3244 contacts (-86.4/contact) +
2D Compatibility (PS) -42436 + (NN) -22767 + (LL) 1052
1D Compatibility (HY) -41200 + (ID) 10450
Total energy: -396069.0 ( -122.09 by residue)
QMean score : 0.558
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