Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLQSIPALPVGDIKKSIGFYCDKLGFTLVHHEDGFAVLMCNEVRIHLWEASDEGWRSRSNDSPVCTGAESFIAGTASCRIEVEGIDELYQHIKPLGILH-------PNTSLKDQWWDERDFAVIDPDNNLISFFQQIKS
1XRK Chain:A ((4-121))
LTSAVPVLTARDVAEAVEFWTDRLGFSRVFVEDDFAGVVRDDVTLFISAVQDQ-----------------VVPDNTQAWVWVRGLDELYAEWSEVVSTNFRDASGPAMTEIVEQPWG-REFALRDPAGNCVHFVAE---
General information:
TITO was launched using:
RESULT:
Template:
1XRK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -69458 for 786 contacts (-88.4/contact) +
2D Compatibility (PS) -11769 + (NN) 1383 + (LL) 496
1D Compatibility (HY) -8400 + (ID) 1500
Total energy: -89248.0 ( -113.55 by residue)
QMean score : 0.401
(partial model without unconserved sides chains):
PDB file :
Tito_1XRK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XRK-query.scw
PDB file :
Tito_Scwrl_1XRK.pdb
: