Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTTTQELKQYITRLFQLSNNETWECEALEEAAENILPERFINDSPLAHLTLETYTYYNNELHDLSIYPFLMYANNQLISVGYL--NHFDMDFLYLTDTKNTIIDERHLLREGGTHHE
3WDG Chain:B ((6-110))
------QLKHYITNLFNLPKDEKWECESIEEIADDILPDQYVRLGALSNKILQTYTYYSDTLHESNIYPFILYYQKQLIAIGYIDENH-DMDFLYLHNTIMPLLDQRYLLTG------
General information:
TITO was launched using:
RESULT:
Template:
3WDG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70393 for 699 contacts (-100.7/contact) +
2D Compatibility (PS) -10465 + (NN) 2957 + (LL) 580
1D Compatibility (HY) -14800 + (ID) 2600
Total energy: -94721.0 ( -135.51 by residue)
QMean score : 0.442
(partial model without unconserved sides chains):
PDB file :
Tito_3WDG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3WDG-query.scw
PDB file :
Tito_Scwrl_3WDG.pdb
: