Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTQGWWFPVMASAFLIFTIVIMFIAGTGQYGLGEKGTVDAFVNGASSLVGVSLIIGLARGINLVLNKGMISDTILHFSSSIVQHMSGPLFIIVLLFIFFCLGFIVPSSSGLAVLSMPIFAPLADTVGIPRFVIVTTYQFGQYAMLFLAPTGLVMATLQMLNVRYSHWLRFVWPVVAFVLIFGGGLLITQVLIYS
4L9P Chain:B ((332-383))
-------------------------------------------------------------------------------------------------------------------------------VPRYMNIATLLPWLSARQYAPEGGFSGRTNKLVDGCYSHWVGNCWPLVQAAL---------------
General information:
TITO was launched using:
RESULT:
Template:
4L9P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43172 for 278 contacts (-155.3/contact) +
2D Compatibility (PS) -4737 + (NN) 4859 + (LL) 10756
1D Compatibility (HY) -1600 + (ID) 700
Total energy: -34594.0 ( -124.44 by residue)
QMean score : -0.158
(partial model without unconserved sides chains):
PDB file :
Tito_4L9P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4L9P-query.scw
PDB file :
Tito_Scwrl_4L9P.pdb
: