Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEKFNNWILNAISGSQTDKNETTEELKGAKFIILYAYSMLVLLALVISNIFIHILEPKLSITTQIIIVLILIEALIGLRFLKAYDVKRGKDKENKKNSKDFVKLKSILVAILFTSLALTAGTVADIYGFTDLGNTRSDLIVWSIGGIIFGLVCYTMEDKK
3NCY Chain:A ((137-247))
-------------------------------------------------VLLNIVGPKMITRVQAVATVLALVPIVGIAVFGWFWFKGE---WNVSGMNTFGAIQSTLNVTLWSFIGVESASVAA----GVVKNPKRNVPIATIGGVLIAAVCYVLS---
General information:
TITO was launched using:
RESULT:
Template:
3NCY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22786 for 507 contacts (-44.9/contact) +
2D Compatibility (PS) -9730 + (NN) 4863 + (LL) 4608
1D Compatibility (HY) -9600 + (ID) 1000
Total energy: -33645.0 ( -66.36 by residue)
QMean score : 0.015
(partial model without unconserved sides chains):
PDB file :
Tito_3NCY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NCY-query.scw
PDB file :
Tito_Scwrl_3NCY.pdb
: