Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKLQLKKWKCRENDIEAVHNNKGYAYQRKLDALEEVRKGYYPIKRAIDLVLSIVLLFLTFPIMFIFAIAIVIDSPGNPIYSQVRVGKMGKLIKIYKLRSMCKNAEKNGAQWADKDDDRITNVGKFIRKTRIDELPQLINVVKGEMSFIGPRPERPEFVELFSSEVIGFEQRCLVTPGLTGLA-----QIQGGYDLT-----PQQKLKYDMKYIHKGSLMMELYI-SIRTLMVVITGEGSR |
| 3RKO Chain:M ((32-95)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALITMGLT-LALSLQLWLQGGYSLTQSAGIPQWQSEFDMPWIPRFGISIHLAIDGLSLLMVVLTG---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3RKO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -4990 for 220 contacts (-22.7/contact) +
2D Compatibility (PS) -5501 + (NN) 1218 + (LL) 12996
1D Compatibility (HY) -6800 + (ID) 1300
Total energy: -4377.0 ( -19.90 by residue)
QMean score : -0.330
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