Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSEKKILILCQYFYPEYVSSATLPTQLAEDLIANHINVDVMCGWPYEYSNHKQVSKTEMHRGIRIRRLKYSRFNNKSKVGRIINFFSLFSKFVINIPKMLKYDQILVYSNPPILPLIPDVLHRLLKKKYSFVVYDIAPDNAIKTGATRPGSMIDKLMRYINRHVYKNAENVIVLGTEMKNYLLN--HQISKNADNIHVIPNWYDMRQLQDNRIYNDTFKAYR-EQYDKILLYSGNMGQLQDMETLI-SFLKLNKDQPQTLTILCGHGKKFADVKTAIEDHRIENVKMFEFLTGTDYADVLKIADVCIASLIKEGVGLGVPSKNYGYLAAKKPLVLIMDKQSDIVQHVEQYDAGIQIDNGDAHAIYN-FINTHSSKELHE-MGERA-----HQLFKDKYTREINTMKYYNLLK |
| 2JJM Chain:A ((148-374)) | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAVSHSLINETHELVKPNKDIQTVYNFIDER-VYFKRDMTQLKKEYGIS---KILIHISNFRKVKRVQDVVQAFAKIVTEVDAKL-LLVGDGPEFCTILQLVKNLHIEDRVLF-LGKQDNVAELLAMSDLMLLLSEKESFGLVLLEA----MACGVP--CIGTRVGGIPEVIQHGDTGYLCEVGDTTGVADQAIQLLKDEELHRNMGERARESVYEQFRSEKIVSQYETI-YYDVLR |
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General information:
TITO was launched using:
| RESULT:
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Template: 2JJM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 29807 for 1820 contacts (16.4/contact) +
2D Compatibility (PS) -22148 + (NN) -3190 + (LL) 13660
1D Compatibility (HY) -17600 + (ID) 2800
Total energy: -2271.0 ( -1.25 by residue)
QMean score : 0.388
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