Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKND----LLVMSVVYILTSVIMFYINGLSKQFFTYVVG----FPIIYFGYICLVNLIKKRSRNN
4M64 Chain:A ((229-282))
--KNDQLSCLLGMALAYNIASNI---INGFAIYYFTYVIGDADLFP-YYLSYAGAANLLT------
General information:
TITO was launched using:
RESULT:
Template:
4M64.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19925 for 188 contacts (-106.0/contact) +
2D Compatibility (PS) -4384 + (NN) -268 + (LL) 984
1D Compatibility (HY) -5200 + (ID) 1150
Total energy: -29943.0 ( -159.27 by residue)
QMean score : -0.029
(partial model without unconserved sides chains):
PDB file :
Tito_4M64.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4M64-query.scw
PDB file :
Tito_Scwrl_4M64.pdb
: