Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVPEEKGSITLSKEAAIIFATAKF-------------KPFKNRIKNN-PLKTNPFLKLHENKKS
2R1F Chain:A ((134-176))
-----------DKNQLVTMASIIEKETAVASERDQVASVFINRLRIGMRLQTDP----------
General information:
TITO was launched using:
RESULT:
Template:
2R1F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -3133 for 115 contacts (-27.2/contact) +
2D Compatibility (PS) -3327 + (NN) -3464 + (LL) 1480
1D Compatibility (HY) -1200 + (ID) 400
Total energy: -10044.0 ( -87.34 by residue)
QMean score : 0.680
(partial model without unconserved sides chains):
PDB file :
Tito_2R1F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2R1F-query.scw
PDB file :
Tito_Scwrl_2R1F.pdb
: