Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHNDLKEVLLTEEDIQNICKELGAQLTKDYQGKPLVCVGILKGSAMFMSDLIKRIDTHLSIDFMDVSSYHGGTESTGEVQIIKDLGSSIENKDVLIIEDILETGTTLKSITELLQSRKVNSLEIVTLLDKPNRRKADIEAKYVGKKIPDEFVVGYGLDYRELYRNLPYIGTLKPEVYSN
4RQA Chain:A ((9-184))
-HNDLKEVLLTEEDIQNICKELGAQLTKDYQGKPLVCVGILKGSAMFMSDLIKRIDTHLSIDFMDVSSY-----STGEVQIIKDLGSSIENKDVLIIEDILETGTTLKSITELLQSRKVNSLEIVTLLDKPNRRKADIEAKYVGKKIPDEFVVGYGLDYRELYRNLPYIGTLKPEVY--
General information:
TITO was launched using:
RESULT:
Template:
4RQA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -132198 for 1330 contacts (-99.4/contact) +
2D Compatibility (PS) -18486 + (NN) -4403 + (LL) -44
1D Compatibility (HY) -26800 + (ID) 8550
Total energy: -190481.0 ( -143.22 by residue)
QMean score : 0.568
(partial model without unconserved sides chains):
PDB file :
Tito_4RQA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RQA-query.scw
PDB file :
Tito_Scwrl_4RQA.pdb
: