Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKFSDYQLILDELKMTLSHVEADEFSTFASKILHAEHIFVAGKGRSGFVANSFAMRLNQLGKQAHVVGESTTPAIKSNDVFVIISGSGSTEHLRLLADKAKSVGADIVLITTNKDSAIGNLAGTNIVLPAGTKYDEQGSA---QPLGSLFEQASQLFLDSVVMGLMTEMNVTEQTMQQNHANLE
1VIV Chain:A ((10-184))
---------ILNELHNSAAYISNEEADQLADHILSSHQIFTAGAGRSGLMAKSFAMRLMHMGFNAHIVGEILTPPLAEGDLVIIGSGSGETKSLIHTAAKAKSLHGIVAALTINPESSIGKQADLIIRMPGSPKDQSNGSYKTIQPMGSLFEQTLLLFYDAVILKLMEKKGLDSETMFTHHANL-
General information:
TITO was launched using:
RESULT:
Template:
1VIV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103408 for 1361 contacts (-76.0/contact) +
2D Compatibility (PS) -18828 + (NN) -11026 + (LL) 936
1D Compatibility (HY) -12000 + (ID) 3750
Total energy: -148076.0 ( -108.80 by residue)
QMean score : 0.699
(partial model without unconserved sides chains):
PDB file :
Tito_1VIV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VIV-query.scw
PDB file :
Tito_Scwrl_1VIV.pdb
: