Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVKIAIFASGSGSNFENIVEHVESGKLENIEVTALYTDHQNAFCIDRAKKHDIPVYINEPKQFDSKAAYEQHLVTLLNKDKVEWIILAGYMRLIGPDLLASFEGKILNIHPSLLPKYKGIDAIGQAYHSGDTITGSTVHYVDCGMDTGEIIEQRQCDIRPDDSKEQLEEKVKKLEYELYPSVIAKIVK
3AV3 Chain:A ((3-186))
--RLAVFASGSGTNFQAIVDAAKRGDLPA-RVALLVCDRPGAKVIERAARENVPAFVFSPKDYPSKAAFESEILRELKGRQIDWIALAGYMRLIGPTLLSAYEGKIVNIHPSLLPAFPGKDAIGQAYRAGVSETGVTVHYVDEG-DTGPVIAQRVVPIVPGEPIEALEERIHQVEHELYPTVLRMLL-
General information:
TITO was launched using:
RESULT:
Template:
3AV3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -90834 for 1451 contacts (-62.6/contact) +
2D Compatibility (PS) -20103 + (NN) -13472 + (LL) 1004
1D Compatibility (HY) -8400 + (ID) 2800
Total energy: -134605.0 ( -92.77 by residue)
QMean score : 0.523
(partial model without unconserved sides chains):
PDB file :
Tito_3AV3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3AV3-query.scw
PDB file :
Tito_Scwrl_3AV3.pdb
: