Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEQNSYVIIDETGIHARPATMLVQTASKFDSDIQLEYNGKKVNLKSIMGVMSLGVGKDAEITIYADGSDESDAIQAISDVLSKEGLTK
1KA5 Chain:A ((2-88))
-EQNSYVIIDETGIHARPATMLVQTASKFDSDIQLEYNGKKVNLKSIMGVMSLGVGKDAEITIYADGSDESDAIQAISDVLSKEGLTK
General information:
TITO was launched using:
RESULT:
Template:
1KA5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -52913 for 723 contacts (-73.2/contact) +
2D Compatibility (PS) -9542 + (NN) -4082 + (LL) 208
1D Compatibility (HY) -11200 + (ID) 4350
Total energy: -81879.0 ( -113.25 by residue)
QMean score : 0.394
(partial model without unconserved sides chains):
PDB file :
Tito_1KA5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KA5-query.scw
PDB file :
Tito_Scwrl_1KA5.pdb
: