Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRMKRFLTIVQILLVVIIIIFGYKIVQTYIEDKQERANYEKLQQKFQMLMSKHQEHVRPQFESLEKINKDIVGWIKLSGTSLNYPVLQGKTNHDYLNLDFEREHRRKGSIFMDFRNELKNLNHNTILYGHHVGDNTMFDVLEDYLKQSFYEKHKIIEFDNKYGKYQLQVFSAYKTTTKDNYIRTDFENDQDYQQFLDETKRKSVINSDVNVTVKDKIMTLSTCEDAYSETTKRIVVVAKIIKVS
4LFD Chain:A ((2-216))
-----------------------------MEDKQERANYEKLQQKFQMLMSKHQEHVRPQFESLEKINKDIVGWIKLSGTSLNYPVLQGKTNHDYLNLDFEREHRRKGSIFMDFRNELKNLNHNTILYGHHVGDNTMFDVLEDYLKQSFYEKHKIIEFDNKYGKYQLQVFSAYKTTTKDNYIRTDFENDQDYQQFLDETKRKSVINSDVNVTVKDRIMTLSTCEDAYSETTKRIVVVAKIIKVS
General information:
TITO was launched using:
RESULT:
Template:
4LFD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85150 for 1657 contacts (-51.4/contact) +
2D Compatibility (PS) -22874 + (NN) -5713 + (LL) 4088
1D Compatibility (HY) -29600 + (ID) 10650
Total energy: -149899.0 ( -90.46 by residue)
QMean score : 0.823
(partial model without unconserved sides chains):
PDB file :
Tito_4LFD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LFD-query.scw
PDB file :
Tito_Scwrl_4LFD.pdb
: